Simplified QuickBooks Accounting for Shopify & Amazon Sellers

US Sales Tax Compliance and Canadian GST/HST Services for Amazon FBA and Shopify Sellers

Whether you’re navigating the US economic nexus for the first time, registering for Canadian GST/HST, cleaning up years of back filings, or facing an audit, Thelonex provides complete sales tax management for e-commerce sellers in the US and Canada.

Sales Tax is Confusing, But Also Costly When Ignored

If any of these sound familiar, you're in the right place.

I don't know where I'm supposed to collect sales tax

I'm not sure if I have nexus in a state

I've made sales but never registered

I'm behind on filings and don't know how to catch up

I'm being audited and have no idea how to handle it

I sell into Canada but have no idea about GST/HST or provincial tax obligations

Sales takes too much time and I don't know who to trust with it

Sales tax is the most penalized compliance area for e-commerce sellers — yet it's the most ignored. States don't send warnings before they send audit notices. The Wayfair decision changed everything in 2018, and most sellers still haven't caught up. The good news: there are legal programs to come forward voluntarily, limit your liability, and get compliant before you're forced to.

Sales Tax Services That Solve Real Problems

Sales tax non-compliance is more common than you think — and far more fixable than most sellers fear. Whether you've been collecting but not filing, selling across states without registering, or completely unaware of your Canadian GST/HST obligations, we've handled situations exactly like yours. We assess your exposure, map your obligations, and build a clear compliance plan — for both the US and Canada — so you know exactly where you stand and exactly what it costs to fix.

Nexus Analysis

Know where you owe before it's too late

Before you can register, file, or get compliant — you need to know where you owe. Nexus is what creates a sales tax obligation in a state. Most Amazon FBA sellers have nexus in more states than they realize because Amazon stores inventory in fulfilment centres across the country — and every state where Amazon stores your products is a state where you likely have physical presence nexus. We run a complete nexus analysis across all 50 US states and every Canadian province — combining your sales data, transaction volume, and FBA warehouse locations to produce an exact compliance map. You'll know precisely where you're exposed, what thresholds have been crossed, and what your registration obligations are — before you take any action.

  • Multi-state nexus evaluation (all 50 US states)
  • Economic nexus tracking (post-Wayfair thresholds by state)
  • Physical presence analysis (FBA warehouse states)
  • Canadian GST/HST registration threshold analysis
  • Provincial nexus assessment (BC PST, QC QST, MB RST, SK PST)
  • Full compliance requirement report — US & Canada
  • ⚠️ Important for Amazon FBA sellers: Even if Amazon collects Marketplace Facilitator Tax on your behalf in most states, you may still have registration and filing obligations in those states. Nexus analysis determines which obligations remain yours.

State & Provincial Registrations

Get registered without the stress

We manage the entire state registration process from start to finish, ensuring you're properly registered in every required state with all necessary permits and accounts.

  • Complete US state sales tax registration paperwork
  • Canadian GST/HST registration with the CRA
  • Provincial tax registrations (BC PST, QC QST, MB RST, SK PST)
  • State and agency communication handling
  • Registration confirmation tracking for all jurisdictions

Ongoing Compliance

We handle everything with sales tax, so you don't have to

Complete sales tax management including calculations, filings, payments, and communication with state departments of revenue. We stay current with changing laws.

  • Monthly/quarterly/annual US state sales tax filings
  • Canadian GST/HST returns (monthly, quarterly, or annual)
  • Provincial tax filings (QST, PST, RST where applicable)
  • Tax calculation and collection oversight
  • US and Canadian law and rate change monitoring

Back Filings & Amended Returns

Fix what's behind and what's wrong

If you're behind on US state filings or Canadian GST/HST returns, or need to correct previous submissions, we handle the full catch-up process — including CRA back filings — and work to minimize penalties while restoring compliance in every jurisdiction..

  • US historical filing preparation (all outstanding states)
  • Canadian GST/HST back filing with the CRA
  • Penalty abatement requests (US states)
  • CRA voluntary disclosure for missed GST/HST periods
  • Compliance restoration planning — US & Canada

Voluntary Disclosure Agreements

Come clean the smart way

We negotiate with US states on your behalf to reduce back taxes, limit look-back periods, and minimize penalties. For Canadian sellers with unregistered GST/HST liability, we manage CRA Voluntary Disclosure Program (VDP) applications to reduce interest and penalties on unreported periods.

  • US state VDA application preparation and filing
  • CRA Voluntary Disclosure Program (VDP) applications
  • State and CRA negotiation and communication
  • Penalty and interest reduction
  • Limited look-back period requests
  • Documentation and compliance planning post-disclosure

Audit Support

Don't face an audit alone

Complete audit management for both US state sales tax audits and CRA GST/HST audits — including document preparation, auditor communication, representation during review meetings, and negotiation of findings.

  • US state sales tax audit notice response
  • CRA GST/HST audit support and document preparation
  • Full document organization for both jurisdictions
  • Auditor communication management
  • Finding negotiation and appeal support (US & Canada)

Your Complete Ecommerce Accounting Partner

Rather than hiring different vendors for each service, we can take care of it all under one roof.

Ecommerce Accounting

Clean monthly P&L, Balance Sheet, and cash flow reports — reconciled across Amazon and Shopify in QuickBooks Online, delivered by the 5th of every month.

Learn More →

QuickBooks Setup

Get your QBO configured correctly for e-commerce from day one — with A2X integration, e-commerce chart of accounts, and sales tax settings properly configured.

Learn More →

Catch-Up Services

Behind on your books? We clean up months or years of backlog in QuickBooks Online and deliver a tax-ready package your CPA can use.

Learn More →

Why Thelonex

⚖️ VDA & CRA VDP Specialists Voluntary Disclosure Agreements in the US and CRA Voluntary Disclosure Program applications in Canada are not standard accounting work — they require specialist knowledge of each state’s and the CRA’s specific procedures. We handle these regularly for e-commerce sellers.

🔍 Amazon FBA Nexus Experts We understand how Amazon’s FBA network creates physical presence nexus across multiple states — and how that interacts with economic nexus thresholds. Most general accountants don’t. We do.

🇨🇦 Canada-Literate on Both Federal and Provincial Tax GST/HST is federal. QST is Quebec-administered. PST varies by province. BC, Saskatchewan, Manitoba, and Quebec all have separate provincial tax regimes. We handle all of them.

📋 No Surprises — Fixed Price Compliance Plans Before we start any compliance work, you receive a written plan with a fixed price for each jurisdiction. You know exactly what you’re paying before we file anything.

Frequently Asked Questions

Got questions? We’ve got answers.

1. Do I have to collect sales tax on all my Amazon sales?

It depends on where you have nexus — either through physical presence (like FBA warehouses storing your inventory) or economic nexus (exceeding a state's revenue or transaction threshold). Amazon collects Marketplace Facilitator Tax in most states, but you may still have registration and filing obligations. We'll map your exact exposure in a free assessment — and tell you specifically which states you need to register in, which Amazon states require you to file even though Amazon collects, and whether any back liability needs to be addressed before you register.

Explore common queries about working with Thelonex. Still unsure?
Contact us — we’re happy to help.

Non-Compliance Doesn't Stay Hidden — It Gets More Expensive Every Month.

Every month without compliance is another month of penalty exposure. Every state you're unregistered in is a potential audit notice. And every day you delay is a day more transactions are unaccounted for. We assess your full exposure — US and Canada — give you a fixed-price compliance plan, and handle everything from registration to ongoing filing. One team. Both countries. No more guessing.